SubtiBank SubtiBank
yotI [2019-07-03 09:30:41]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yotI [2019-07-03 09:30:41]

unknown
locus
BSU19870
pI
5.41
mw
13.71 kDa
protein length
120 aa Sequence Blast
gene length
363 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
yodW
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]

    • Gene

    Coordinates
    2,153,718 2,154,080

    The protein

    Protein family

  • SCO1/2 family (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|AFCA823BA7245A295B3282602A928D2CD0F8CD27|yosX]-[gene|B604367A80B7D3DF4A940C12A35EDF37B0E415F2|yotB]-[gene|6416197EF316D74998012765EF9819072C38D2E2|yotC]-[gene|470037C34BD5D3EB5BDAD85BD4178ABDB6330A62|yotD]-[gene|5C8815965146BCD8ED238258B3F820AA17241165|yotE]-[gene|177BAE8E5143CBE479B8EF6814F2A1066E72D658|yotF]-[gene|CE176CE32089F79C9BAC36641DDBBA8C9C38C957|yotG]-[gene|5240CC5115326ACBB2B73F7610987C842C246F24|yotH]-[gene|ADFAFAB949F0BED0681E35C3055DB0984DA7910E|yotI]-[gene|C5508537A5CB1E2F71329CD822242EE988D395F3|yotJ]-[gene|3C740F35E67CDD7FB6BF19E0FF43F973D254EF3E|yotK]-[gene|3899DF460037B569066F452EC50AD97672AA5ACA|yotM]-[gene|46826326719EB32B5733953EC090FD91CB59C5B6|sprB]
    description
    [Pubmed|25299644]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|25299644], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|25299644], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]
  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]

    • regulatory mechanism

  • [protein|6977F18870004AD236539D9409255815E6BE9241|CsoR]: repression, [Pubmed|20233928], in [regulon|6977F18870004AD236539D9409255815E6BE9241|CsoR regulon]

    • regulation

  • ''[protein|search|sprB]'': expressed during the middle and late stages of [SW|sporulation] [Pubmed|25299644]
    • view in new tab

    Biological materials

    Mutant

  • BKE19870 ([gene|ADFAFAB949F0BED0681E35C3055DB0984DA7910E|yotI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19870 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCCTGTATCTTTAAAAATTT, downstream forward: _UP4_TAATGTAAATAGGAACAGGA
  • BKK19870 ([gene|ADFAFAB949F0BED0681E35C3055DB0984DA7910E|yotI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19870 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCCTGTATCTTTAAAAATTT, downstream forward: _UP4_TAATGTAAATAGGAACAGGA

    • References

  • 25299644